spapros.se.ProbesetSelector.select_probeset

ProbesetSelector.select_probeset()

Run full selection procedure.

This is the central method of the Spapros selection pipeline. After initializing an instance of the ProbesetEvaluator, invoke this method to start the selection.

Examples

Minimal example:

# create an instance of the ProbesetSelector class
selector = se.ProbesetSelector(adata,
                            n=50,
                            celltype_key="celltype",
                            verbosity=1)
selector.select_probeset()

Notes

For further examples, see our tutorials: https://spapros.readthedocs.io/en/latest/tutorials.html

Return type:

None