spapros.pl.gene_overlap

spapros.pl.gene_overlap(selection_df, style='upset', min_degree=0, fontsize=18, show=True, save=None)

Plot overlap of gene sets

Parameters:

• selection_df (DataFrame) – Table with gene sets. Gene names are given in the index, gene sets are given as boolean columns.

• style (Literal['upset', 'venn']) –

  Plot type. Options are

  • ”upset”: upset plot

  • ”venn”: venn diagram

• min_degree (int) – Only for style=”upset”: minimum degree (number of categories intersected) of a subset to be shown in the plot.

• fontsize (int) – Matplotlib fontsize.

• show (bool) – Whether to display the plot.

• save (Optional[str]) – Save the plot to path.

Return type:

None