Index

C

clf_genes_umaps() (in module spapros.pl) cluster_similarity() (in module spapros.pl)

compute_or_load_shared_results() (spapros.ev.ProbesetEvaluator method) confusion_matrix() (in module spapros.pl) correlation_matrix() (in module spapros.pl)

E

evaluate_probeset() (spapros.ev.ProbesetEvaluator method)

evaluate_probeset_pipeline() (spapros.ev.ProbesetEvaluator method)

F

forest_classifications() (in module spapros.ev)

G

gene_overlap() (in module spapros.pl)

get_expression_quantile() (in module spapros.ut) get_metric_default_parameters() (in module spapros.ev)

I

info() (spapros.se.ProbesetSelector method)

K

knn_overlap() (in module spapros.pl)

L

load_results() (spapros.ev.ProbesetEvaluator method)

M

marker_correlation() (in module spapros.pl) masked_dotplot() (in module spapros.pl) module spapros.ev spapros.pl spapros.se spapros.ut

P

pipeline_summary_statistics() (spapros.ev.ProbesetEvaluator method) plateau_penalty_kernel() (in module spapros.ut) plot_clf_genes() (spapros.se.ProbesetSelector method) plot_cluster_similarity() (spapros.ev.ProbesetEvaluator method) plot_coexpression() (spapros.ev.ProbesetEvaluator method) (spapros.se.ProbesetSelector method) plot_confusion_matrix() (spapros.ev.ProbesetEvaluator method) plot_evaluations() (spapros.ev.ProbesetEvaluator method)

plot_explore_constraint() (spapros.se.ProbesetSelector method) plot_gene_overlap() (spapros.se.ProbesetSelector method) plot_histogram() (spapros.se.ProbesetSelector method) plot_knn_overlap() (spapros.ev.ProbesetEvaluator method) plot_marker_corr() (spapros.ev.ProbesetEvaluator method) plot_summary() (spapros.ev.ProbesetEvaluator method) ProbesetEvaluator (class in spapros.ev) ProbesetSelector (class in spapros.se)

S

select_DE_genes() (in module spapros.se) select_pca_genes() (in module spapros.se) select_probeset() (spapros.se.ProbesetSelector method) select_reference_probesets() (in module spapros.se) selection_histogram() (in module spapros.pl) single_forest_classifications() (in module spapros.ev) spapros.ev module

spapros.pl module spapros.se module spapros.ut module summary_statistics() (spapros.ev.ProbesetEvaluator method) summary_table() (in module spapros.pl)

T

transfered_expression_thresholds() (in module spapros.ut)